NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062389_100030468

Scaffold Ga0062389_100030468


Overview

Basic Information
Taxon OID3300004092 Open in IMG/M
Scaffold IDGa0062389_100030468 Open in IMG/M
Source Dataset NameCoassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4008
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104586Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0062389_1000304686F104586N/AMYLPVLLAIPLGAFITLFSAPDMRYANPVAGVDFGAEINSLYQSLPAAGGIIVVGSSASFSTPILFTGSDKPVLLVGLPGDMISLTYTGTGAAITFDYGTSHRMGHGMRDLTLTGPGNSTNTIGVVFGGDNGAEGIEIRDFKIQSFGTNLKMGSHTWLAYFQHGMVRDGGTNLLLPSGLIEAGEQITFNHVTFADAPAPHTNSVWIQGGGQEVVFTDCSFDQAQLRVGNGAASSAQISVKGSHFENPNYASPGSVNYDYVAVDNNPGNFVRITDSFLLQGAPSNGPAEFLSVQGGYVWICGVGMYTPAGSPLSHFAVAQNGGVVEMVGFHDLSNNIAGSLVGQ*

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